SMTL ID : 7w62.1 (1 other biounit)

Mevo lectin complex with mannotetraose (Man4)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-heptamer

Ligands

5 x MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose

MAN-MAN-MAN-MAN.1: 13 residues within 4Å: Chain A: G.17, G.18, T.19, Y.41, L.43, H.45, K.64, R.93, A.131, G.132, S.133, D.134, D.136 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.19, A:T.19 MAN-MAN-MAN-MAN.2: 11 residues within 4Å: Chain B: G.17, G.18, Y.41, L.43, H.45, K.64, R.93, G.132, S.133, D.134, D.136 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.18, B:G.132, B:S.133, B:D.134, B:D.134 Water bridges: B:D.91 MAN-MAN-MAN-MAN.3: 10 residues within 4Å: Chain C: G.17, G.18, Y.41, H.45, K.64, R.93, G.132, S.133, D.134, D.136 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:G.18, C:G.132, C:S.133, C:D.134, C:D.134 MAN-MAN-MAN-MAN.5: 12 residues within 4Å: Chain E: G.17, G.18, T.19, Y.41, L.43, H.45, K.64, R.93, G.132, S.133, D.134, D.136 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:T.19 Water bridges: E:A.131, E:G.132 MAN-MAN-MAN-MAN.7: 10 residues within 4Å: Chain G: G.17, G.18, Y.41, H.45, K.64, R.93, G.132, S.133, D.134, D.136 5 PLIP interactions: 5 interactions with chain G Hydrogen bonds: G:G.18, G:G.132, G:S.133, G:D.134, G:D.134

2 x MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose

MAN-MAN-MAN.4: 11 residues within 4Å: Chain D: G.17, G.18, Y.41, L.43, H.45, K.64, R.93, G.132, S.133, D.134, D.136 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:G.18, D:G.132, D:S.133, D:D.134, D:D.134 MAN-MAN-MAN.6: 11 residues within 4Å: Chain F: G.17, G.18, Y.41, L.43, H.45, K.64, R.93, G.132, S.133, D.134, D.136 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:G.18, F:G.132, F:S.133, F:D.134, F:D.134

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.8: 6 residues within 4Å: Chain D: E.12, V.13, G.14, Y.86 Chain E: K.34, E.68 5 PLIP interactions: 3 interactions with chain D, 2 interactions with chain E Hydrogen bonds: D:E.12, D:G.14, D:Y.86, E:K.34, E:K.34 EDO.9: 6 residues within 4Å: Chain C: K.34, E.68 Chain F: E.12, V.13, G.14, Y.86 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain F Hydrogen bonds: C:K.34, C:E.68, F:G.14, F:G.14 EDO.10: 6 residues within 4Å: Chain F: K.34, E.68 Chain G: E.12, V.13, G.14, Y.86 4 PLIP interactions: 2 interactions with chain G, 2 interactions with chain F Hydrogen bonds: G:G.14, G:G.14, F:K.34, F:K.34

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sivaji, N. et al., Mevo lectin complex with mannotetraose (Man4). To Be Published

Release Date

2023-01-18

Peptides

lectin: ABCDEFG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
G

C
A

D
D

E
E

F
F

G
C

lectin

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