SMTL ID : 7bsp.1

Cryo-EM structure of a human ATP11C-CDC50A flippase in E1-AMPPCP state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 8 residues within 4Å: Chain A: W.316 Chain B: N.180, V.234, N.235, W.236, L.237, N.298, P.300 No protein-ligand interaction detected (PLIP)

1 x ACP: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER(Non-covalent)

ACP.2: 22 residues within 4Å: Chain A: D.402, T.404, D.490, E.491, F.533, R.538, M.540, K.556, G.557, A.558, R.587, T.588, L.589, T.667, G.668, D.669, M.783, K.788, D.809, N.812, D.813, E.830 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:E.491, A:A.558, A:D.669, A:D.669, A:R.782, A:M.783, A:N.812, A:D.813 Salt bridges: A:K.788 pi-Stacking: A:F.533

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 5 residues within 4Å: Chain B: F.103, T.105, F.186, W.292, N.294 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:W.292 Hydrogen bonds: B:N.294 NAG.4: 3 residues within 4Å: Chain B: P.90, N.107, W.292 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakanishi, H. et al., Transport Cycle of Plasma Membrane Flippase ATP11C by Cryo-EM. Cell Rep (2020)

Release Date

2020-09-30

Peptides

ATP11C: A
CDC50A: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Membrane

We predict this structure to be a membrane protein.
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ATP11C

CDC50A

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