SMTL ID : 7bss.1

Cryo-EM structure of a human ATP11C-CDC50A flippase in E1AlF state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x ALF: TETRAFLUOROALUMINATE ION(Non-covalent)

ALF.1: 10 residues within 4Å: Chain A: D.402, K.403, T.404, T.667, G.668, K.788, D.809, N.812, D.813 Ligands: MG.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.402, A:D.402

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 7 residues within 4Å: Chain A: D.402, T.404, G.405, D.809, G.810, D.813 Ligands: ALF.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.402, A:T.404, A:D.809

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG.3: 8 residues within 4Å: Chain A: W.316 Chain B: N.180, N.235, L.237, N.298, Y.299, P.300 Ligands: NAG.4 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:L.237 Hydrogen bonds: B:N.176, B:N.180, B:N.235 NAG.4: 4 residues within 4Å: Chain B: V.234, N.235 Ligands: NAG.3, MAN.5 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:W.236 NAG.6: 3 residues within 4Å: Chain B: T.105, W.292, N.294 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.105 NAG.7: 3 residues within 4Å: Chain B: N.107, I.188, W.292 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:I.188

1 x MAN: alpha-D-mannopyranose(Non-functional Binders)

MAN.5: 1 residues within 4Å: Ligands: NAG.4 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakanishi, H. et al., Transport Cycle of Plasma Membrane Flippase ATP11C by Cryo-EM. Cell Rep (2020)

Release Date

2020-09-30

Peptides

ATP11C: A
CDC50A: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Membrane

We predict this structure to be a membrane protein.
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ATP11C

CDC50A

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