SMTL ID : 7cb2.1 (1 other biounit)

The 6-phosphogluconate dehydrogenase (NADP-bound) from Staphylococcus aureus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 11 residues within 4Å: Chain A: G.9, L.10, A.11, N.32, R.33, S.34, K.37, M.72, V.73, Q.74, A.78 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:L.10, A:N.32, A:R.33, A:R.33, A:S.34, A:S.34, A:Q.74, A:Q.74 Salt bridges: A:R.33, A:K.37, A:K.37 pi-Cation interactions: A:R.33, A:R.33 NAP.4: 11 residues within 4Å: Chain B: G.9, L.10, A.11, N.32, R.33, S.34, K.37, M.72, V.73, Q.74, A.78 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:L.10, B:N.32, B:R.33, B:S.34, B:Q.74 Salt bridges: B:R.33, B:K.37 pi-Cation interactions: B:R.33, B:R.33

3 x NO3: NITRATE ION(Non-functional Binders)

NO3.2: 4 residues within 4Å: Chain A: E.145, Y.148, N.149, Y.171 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.149, A:N.149 NO3.3: 2 residues within 4Å: Chain A: R.340, P.381 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.381 Water bridges: A:R.340, A:R.340 NO3.5: 3 residues within 4Å: Chain B: E.145, N.149, Y.171 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.145, B:N.149, B:N.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, H. et al., The 6-phosphogluconate dehydrogenase (NADP-bound) structures from Staphylococcus aureus. To Be Published

Release Date

2021-06-16

Peptides

6-phosphogluconate dehydrogenase, decarboxylating: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

6-phosphogluconate dehydrogenase, decarboxylating

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