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SMTL ID : 7cb5.1
(1 other biounit)
The 6-phosphogluconate dehydrogenase from Staphylococcus aureus (6-phosphogluconate bound)
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.54 Å
Oligo State
homo-dimer
Ligands
2 x
6PG
:
6-PHOSPHOGLUCONIC ACID
(Non-covalent)
6PG.1:
18 residues within 4Å:
Chain A:
N.101
,
V.126
,
S.127
,
G.128
,
G.129
,
K.182
,
H.185
,
N.186
,
E.189
,
Y.190
,
Q.258
,
K.259
,
T.261
,
R.286
,
I.364
Chain B:
R.444
,
F.447
,
H.450
19
PLIP interactions
:
17 interactions with chain A
,
2 interactions with chain B
Hydrogen bonds:
A:N.101
,
A:N.101
,
A:V.126
,
A:G.128
,
A:G.129
,
A:K.182
,
A:N.186
,
A:E.189
,
A:E.189
,
A:K.259
,
A:T.261
,
A:T.261
,
A:I.364
Water bridges:
A:R.286
Salt bridges:
A:K.182
,
A:H.185
,
A:R.286
,
B:R.444
,
B:H.450
6PG.2:
18 residues within 4Å:
Chain A:
R.444
,
F.447
,
H.450
Chain B:
N.101
,
V.126
,
S.127
,
G.128
,
G.129
,
K.182
,
H.185
,
N.186
,
E.189
,
Y.190
,
G.257
,
Q.258
,
K.259
,
R.286
,
I.364
15
PLIP interactions
:
13 interactions with chain B
,
2 interactions with chain A
Hydrogen bonds:
B:G.128
,
B:G.129
,
B:K.182
,
B:K.182
,
B:Y.190
,
B:K.259
Water bridges:
B:G.262
,
B:G.262
,
B:R.286
,
B:R.286
Salt bridges:
B:K.182
,
B:H.185
,
B:R.286
,
A:R.444
,
A:H.450
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Wang, H. et al., Multi-target mode of action of silver against Staphylococcus aureus endows it with capability to combat antibiotic resistance. Nat Commun (2021)
Release Date
2021-04-07
Peptides
6-phosphogluconate dehydrogenase, decarboxylating:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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6-phosphogluconate dehydrogenase, decarboxylating
Related Entries With Identical Sequence
7cb0.1
|
7cb0.2
|
7cb2.1
|
7cb2.2
|
7cb5.2
|
7cb6.1
|
7cb6.2
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme