SMTL ID : 7ccw.1

Crystal structure of death-associated protein kinase 1 in complex with resveratrol and MES

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x STL: RESVERATROL(Non-covalent)

STL.1: 13 residues within 4Å: Chain A: L.19, G.20, S.21, G.22, V.27, A.40, E.94, L.95, V.96, E.100, M.146, I.160 Ligands: MES.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.19, A:V.27, A:A.40, A:I.160 Hydrogen bonds: A:S.21, A:V.96, A:V.96 Water bridges: A:E.100, A:E.100

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.2: 8 residues within 4Å: Chain A: V.27, K.42, E.143, N.144, I.160, D.161 Ligands: STL.1, SO4.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.161, A:D.161 Water bridges: A:F.162 Salt bridges: A:K.42, A:D.161

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: R.63, H.166, K.175 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.167, A:E.173 Salt bridges: A:R.63 SO4.4: 3 residues within 4Å: Chain A: G.22, Q.23 Ligands: MES.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.23 Water bridges: A:D.161 SO4.5: 3 residues within 4Å: Chain A: F.236, K.249, R.253 3 PLIP interactions: 3 interactions with chain A Water bridges: A:F.236 Salt bridges: A:K.249, A:R.253

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yokoyama, T. et al., Crystal structure of death-associated protein kinase 1 in complex with the dietary compound resveratrol. Iucrj (2020)

Release Date

2021-01-20

Peptides

Death-associated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Death-associated protein kinase 1

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