SMTL ID : 7cow.1

353 bp di-nucleosome harboring cohesive DNA termini with linker histone H1.0

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.86 Å

Oligo State

hetero-4-4-4-4-2-mer

Ligands

3 x CA: CALCIUM ION(Non-functional Binders)

CA.1: 1 residues within 4Å: Chain A: G.149 No protein-ligand interaction detected (PLIP) CA.2: 1 residues within 4Å: Chain A: G.325 No protein-ligand interaction detected (PLIP) CA.5: 1 residues within 4Å: Chain B: G.116 No protein-ligand interaction detected (PLIP)

5 x K: POTASSIUM ION(Non-functional Binders)

K.3: 3 residues within 4Å: Chain A: T.237, A.238 Chain B: A.115 No protein-ligand interaction detected (PLIP) K.4: 4 residues within 4Å: Chain A: T.61, A.62 Chain B: G.290, A.291 No protein-ligand interaction detected (PLIP) K.6: 5 residues within 4Å: Chain A: A.289, G.290, A.291 Chain B: T.61, A.62 No protein-ligand interaction detected (PLIP) K.7: 2 residues within 4Å: Chain B: T.237, A.238 No protein-ligand interaction detected (PLIP) K.8: 4 residues within 4Å: Chain A: G.53, A.54 Chain B: T.298, A.299 No protein-ligand interaction detected (PLIP)

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.9: 7 residues within 4Å: Chain A: T.301 Chain E: G.47, A.48, G.49, A.50 Chain F: T.93, S.94 Ligand excluded by PLIP CL.10: 6 residues within 4Å: Chain I: G.47, A.48, G.49, A.50 Chain J: T.93, S.94 Ligand excluded by PLIP CL.11: 5 residues within 4Å: Chain M: G.47, A.48, G.49, A.50 Chain N: S.94 Ligand excluded by PLIP CL.12: 6 residues within 4Å: Chain Q: G.47, A.48, G.49, A.50 Chain R: T.93, S.94 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Adhireksan, Z. et al., Engineering nucleosomes for generating diverse chromatin assemblies. Nucleic Acids Res. (2021)

Release Date

2021-08-11

Peptides

Histone H3.1: CGKO
Histone H4: DHLP
Histone H2A type 1-B/E: EIMQ
Histone H2B type 1-J: FJNR
Histone H1.0: ST

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

G
E

K
K

O
O

D
B

H
F

L
L

P
P

E
C

I
G

M
M

Q
Q

F
D

J
H

N
N

R
R

S
S

T
T

Histone H3.1

Histone H4

Histone H2A type 1-B/E

Histone H2B type 1-J

Histone H1.0

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