- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GFU: 4-[[(3R,4R,5S)-4-(hydroxymethyl)-5-(3-methoxy-4-oxidanyl-phenyl)oxolan-3-yl]methyl]-2-methoxy-phenol(Non-covalent)
GFU.1: 18 residues within 4Å:- Chain A: V.92, F.94, G.124, M.125, C.165, Y.169, F.170, N.173, Q.176, M.177, V.178, T.179, G.273, H.276, F.277, I.280
- Chain B: L.46
- Ligands: NDP.2
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:V.92, A:F.94, A:F.170, A:F.170
- Hydrogen bonds: A:M.125, A:V.178, A:H.276
- pi-Stacking: A:F.94, A:F.277
GFU.3: 18 residues within 4Å:- Chain A: L.46
- Chain B: V.92, F.94, G.124, M.125, C.165, Y.169, F.170, N.173, Q.176, M.177, V.178, T.179, G.273, H.276, F.277, I.280
- Ligands: NDP.4
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:M.125, B:V.178
- Water bridges: B:H.270
- pi-Stacking: B:F.94, B:F.277
- 2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
NDP.2: 30 residues within 4Å:- Chain A: G.16, A.17, T.18, G.19, Y.20, I.21, R.41, K.50, F.69, A.88, M.89, S.90, G.91, V.92, R.95, S.96, N.98, I.99, V.101, S.121, E.122, F.123, G.124, K.144, A.164, C.165, F.166, Y.169, F.170
- Ligands: GFU.1
33 PLIP interactions:33 interactions with chain A- Hydrophobic interactions: A:V.92, A:F.166, A:F.166, A:Y.169, A:Y.169
- Hydrogen bonds: A:G.16, A:T.18, A:T.18, A:G.19, A:Y.20, A:I.21, A:K.50, A:M.89, A:S.90, A:S.90, A:G.91, A:S.96, A:N.98, A:K.144, A:K.144, A:A.164, A:F.166
- Water bridges: A:G.22, A:R.41, A:R.41, A:R.41, A:R.95, A:R.95, A:G.163
- Salt bridges: A:R.41, A:K.50, A:R.95, A:R.95
NDP.4: 31 residues within 4Å:- Chain B: G.16, A.17, T.18, G.19, Y.20, I.21, L.39, R.41, K.50, F.69, A.88, M.89, S.90, G.91, V.92, R.95, S.96, N.98, I.99, V.101, S.121, E.122, F.123, G.124, K.144, A.164, C.165, F.166, Y.169, F.170
- Ligands: GFU.3
32 PLIP interactions:32 interactions with chain B- Hydrophobic interactions: B:V.92, B:F.166, B:F.166, B:Y.169, B:Y.169
- Hydrogen bonds: B:G.16, B:T.18, B:T.18, B:G.19, B:Y.20, B:I.21, B:L.39, B:K.50, B:M.89, B:S.90, B:S.90, B:G.91, B:S.96, B:N.98, B:K.144, B:K.144, B:A.164, B:F.166
- Water bridges: B:A.17, B:A.17, B:G.22, B:R.41, B:A.164
- Salt bridges: B:R.41, B:K.50, B:R.95, B:R.95
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Xiao, Y. et al., Structure-based engineering of substrate specificity for pinoresinol-lariciresinol reductases. Nat Commun (2021)
- Release Date
- 2021-06-09
- Peptides
- Pinoresinol reductase 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GFU: 4-[[(3R,4R,5S)-4-(hydroxymethyl)-5-(3-methoxy-4-oxidanyl-phenyl)oxolan-3-yl]methyl]-2-methoxy-phenol(Non-covalent)
- 2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Xiao, Y. et al., Structure-based engineering of substrate specificity for pinoresinol-lariciresinol reductases. Nat Commun (2021)
- Release Date
- 2021-06-09
- Peptides
- Pinoresinol reductase 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B