- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.98 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GO6: (2R,3R)-2,3-bis[(3-methoxy-4-oxidanyl-phenyl)methyl]butane-1,4-diol(Non-covalent)
- 2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
NDP.2: 31 residues within 4Å:- Chain A: G.16, A.17, T.18, G.19, Y.20, I.21, R.41, I.44, K.50, F.69, A.88, M.89, S.90, G.91, V.92, R.95, S.96, N.98, I.99, V.101, S.121, E.122, F.123, G.124, K.144, A.164, C.165, F.166, Y.169, F.170
- Ligands: GO6.1
29 PLIP interactions:29 interactions with chain A- Hydrophobic interactions: A:V.92, A:F.166
- Hydrogen bonds: A:T.18, A:T.18, A:T.18, A:G.19, A:Y.20, A:I.21, A:K.50, A:M.89, A:S.90, A:S.90, A:G.91, A:S.96, A:N.98, A:K.144, A:K.144, A:A.164, A:F.166
- Water bridges: A:G.16, A:G.16, A:G.16, A:G.22, A:L.39, A:A.164
- Salt bridges: A:R.41, A:K.50, A:R.95, A:R.95
NDP.4: 31 residues within 4Å:- Chain B: G.16, A.17, T.18, G.19, Y.20, I.21, R.41, I.44, K.50, F.69, A.88, M.89, S.90, G.91, V.92, R.95, S.96, N.98, I.99, V.101, S.121, E.122, F.123, G.124, K.144, A.164, C.165, F.166, Y.169, F.170
- Ligands: GO6.3
32 PLIP interactions:32 interactions with chain B- Hydrophobic interactions: B:V.92, B:F.166, B:F.166
- Hydrogen bonds: B:T.18, B:T.18, B:Y.20, B:I.21, B:K.50, B:M.89, B:S.90, B:S.90, B:G.91, B:S.96, B:N.98, B:K.144, B:K.144, B:A.164, B:F.166
- Water bridges: B:G.16, B:G.16, B:G.16, B:A.17, B:T.18, B:G.22, B:R.41, B:R.41, B:R.95, B:A.164
- Salt bridges: B:R.41, B:K.50, B:R.95, B:R.95
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Xiao, Y. et al., Structure-based engineering of substrate specificity for pinoresinol-lariciresinol reductases. Nat Commun (2021)
- Release Date
- 2021-06-09
- Peptides
- Pinoresinol reductase 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.98 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GO6: (2R,3R)-2,3-bis[(3-methoxy-4-oxidanyl-phenyl)methyl]butane-1,4-diol(Non-covalent)
- 2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Xiao, Y. et al., Structure-based engineering of substrate specificity for pinoresinol-lariciresinol reductases. Nat Commun (2021)
- Release Date
- 2021-06-09
- Peptides
- Pinoresinol reductase 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D