SMTL ID : 7d5u.1

BACE2 xaperone complex with N-{3-[(9S)-7-amino-2,2-difluoro-9-(prop-1-yn-1-yl)-6-oxa-8-azaspiro[3.5]non-7-en-9-yl]-4-fluorophenyl}-5-cyanopyridine-2-carboxamide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GX6: N-[3-[(9S)-7-azanyl-2,2-bis(fluoranyl)-9-prop-1-ynyl-6-oxa-8-azaspiro[3.5]non-7-en-9-yl]-4-fluoranyl-phenyl]-5-cyano-pyridine-2-carboxamide(Non-covalent)

GX6.1: 21 residues within 4Å: Chain A: D.13, S.14, G.15, G.17, Y.18, L.34, D.36, G.38, S.39, V.73, Y.75, W.80, F.112, W.119, I.122, D.229, S.230, G.231, T.232, T.233, A.335 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.75 Hydrogen bonds: A:D.36, A:G.38, A:G.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fujimoto, K. et al., Structure-Based Approaches to Improving Selectivity through Utilizing Explicit Water Molecules: Discovery of Selective beta-Secretase (BACE1) Inhibitors over BACE2. J.Med.Chem. (2021)

Release Date

2021-03-31

Peptides

Beta-secretase 2: A
xaperone: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Beta-secretase 2

xaperone

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