SMTL ID : 7d6y.1

eIF4E in Complex with a Disulphide-Free Autonomous VH Domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MGO: [[(2R,3S,4R,5R)-5-(6-AMINO-3-METHYL-4-OXO-5H-IMIDAZO[4,5-C]PYRIDIN-1-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHOXY-HYDROXY-PHOSPHORYL] PHOSPHONO HYDROGEN PHOSPHATE(Non-covalent)

MGO.1: 7 residues within 4Å: Chain A: W.56, M.101, W.102, E.103, R.157, K.159, K.162 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:W.102, A:E.103, A:E.103 Water bridges: A:D.90, A:R.112, A:N.155, A:N.155, A:N.155, A:R.157, A:R.157, A:R.157, A:R.157, A:K.162, A:K.162 Salt bridges: A:R.157, A:R.157, A:K.159, A:K.159, A:K.162, A:K.162, A:K.162 pi-Stacking: A:W.56, A:W.102

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.2: 8 residues within 4Å: Chain A: F.47, R.61, I.63, Q.80, N.84, L.85, M.86, Y.91 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.86 pi-Cation interactions: A:F.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frosi, Y. et al., Engineering Disulphide-Free Autonomous Antibody VH Domains to modulate intracellular pathways. To Be Published

Release Date

2021-10-06

Peptides

Eukaryotic translation initiation factor 4E: A
VH Domain (1C5): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Eukaryotic translation initiation factor 4E

VH Domain (1C5)

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