- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- monomer
- Ligands
- 1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
- 1 x CA: CALCIUM ION(Non-covalent)
- 2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.4: 3 residues within 4Å:- Chain A: N.332, S.334, V.335
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.332
- Water bridges: A:N.332
NAG.30: 5 residues within 4Å:- Chain A: N.205, S.208, A.214, V.215, Q.217
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:S.208, A:V.215, A:Q.217, A:Q.217
- Water bridges: A:N.205, A:S.207, A:S.207
- 19 x IOD: IODIDE ION(Non-functional Binders)
IOD.5: 6 residues within 4Å:- Chain A: A.44, R.45, W.46, N.341, V.342, W.452
Ligand excluded by PLIPIOD.6: 2 residues within 4Å:- Chain A: N.80, P.145
Ligand excluded by PLIPIOD.7: 1 residues within 4Å:- Chain A: R.96
Ligand excluded by PLIPIOD.8: 3 residues within 4Å:- Chain A: N.216, Q.217, F.229
Ligand excluded by PLIPIOD.9: 2 residues within 4Å:- Chain A: F.309, W.530
Ligand excluded by PLIPIOD.10: 3 residues within 4Å:- Chain A: H.565, A.566, F.567
Ligand excluded by PLIPIOD.11: 1 residues within 4Å:- Chain A: I.387
Ligand excluded by PLIPIOD.12: 1 residues within 4Å:- Chain A: A.225
Ligand excluded by PLIPIOD.13: 2 residues within 4Å:- Chain A: S.359, L.361
Ligand excluded by PLIPIOD.14: 3 residues within 4Å:- Chain A: R.31, N.333
- Ligands: OSM.19
Ligand excluded by PLIPIOD.20: 5 residues within 4Å:- Chain A: H.109, R.255, E.258
- Ligands: HEM.2, PEO.29
Ligand excluded by PLIPIOD.21: 1 residues within 4Å:- Chain A: P.197
Ligand excluded by PLIPIOD.22: 3 residues within 4Å:- Chain A: F.254, R.255, F.381
Ligand excluded by PLIPIOD.23: 2 residues within 4Å:- Chain A: L.86, D.87
Ligand excluded by PLIPIOD.24: 2 residues within 4Å:- Chain A: L.199, R.202
Ligand excluded by PLIPIOD.25: 2 residues within 4Å:- Chain A: P.197, S.198
Ligand excluded by PLIPIOD.26: 4 residues within 4Å:- Chain A: E.363, R.397, T.560, K.561
Ligand excluded by PLIPIOD.27: 2 residues within 4Å:- Chain A: P.236, T.425
Ligand excluded by PLIPIOD.28: 1 residues within 4Å:- Chain A: T.66
Ligand excluded by PLIP- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x ZN: ZINC ION(Non-covalent)
- 3 x OSM: 1-(OXIDOSULFANYL)METHANAMINE(Non-covalent)
OSM.17: 5 residues within 4Å:- Chain A: N.230, K.232, S.235, P.236, C.248
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.230
- Water bridges: A:F.254
OSM.18: 4 residues within 4Å:- Chain A: R.76, P.149, K.150, N.419
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:K.150, A:N.419
- Water bridges: A:P.149, A:R.418, A:N.419
OSM.19: 5 residues within 4Å:- Chain A: R.31, Y.331, N.333, R.527
- Ligands: IOD.14
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.31, A:N.333
- Water bridges: A:Y.331
- 1 x PEO: HYDROGEN PEROXIDE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Singh, P.K. et al., Structure of a ternary complex of lactoperoxidase with iodide and hydrogen peroxide at 1.77 angstrom resolution. J.Inorg.Biochem. (2021)
- Release Date
- 2020-12-30
- Peptides
- Lactoperoxidase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- monomer
- Ligands
- 1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
- 1 x CA: CALCIUM ION(Non-covalent)
- 2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 19 x IOD: IODIDE ION(Non-functional Binders)
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x ZN: ZINC ION(Non-covalent)
- 3 x OSM: 1-(OXIDOSULFANYL)METHANAMINE(Non-covalent)
- 1 x PEO: HYDROGEN PEROXIDE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Singh, P.K. et al., Structure of a ternary complex of lactoperoxidase with iodide and hydrogen peroxide at 1.77 angstrom resolution. J.Inorg.Biochem. (2021)
- Release Date
- 2020-12-30
- Peptides
- Lactoperoxidase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A