- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- monomer
- Ligands
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
- 1 x CA: CALCIUM ION(Non-covalent)
- 11 x IOD: IODIDE ION(Non-functional Binders)
IOD.3: 2 residues within 4Å:- Chain A: N.80, P.145
Ligand excluded by PLIPIOD.4: 2 residues within 4Å:- Chain A: P.236, P.424
Ligand excluded by PLIPIOD.5: 3 residues within 4Å:- Chain A: N.216, Q.217, F.229
Ligand excluded by PLIPIOD.6: 2 residues within 4Å:- Chain A: F.309, W.530
Ligand excluded by PLIPIOD.7: 4 residues within 4Å:- Chain A: E.363, R.397, I.559, T.560
Ligand excluded by PLIPIOD.8: 3 residues within 4Å:- Chain A: N.95, R.96, R.506
Ligand excluded by PLIPIOD.9: 3 residues within 4Å:- Chain A: K.462, G.466
- Ligands: PEG.19
Ligand excluded by PLIPIOD.10: 2 residues within 4Å:- Chain A: L.224, A.225
Ligand excluded by PLIPIOD.13: 2 residues within 4Å:- Chain A: S.198, R.202
Ligand excluded by PLIPIOD.32: 7 residues within 4Å:- Chain A: A.44, R.45, W.46, L.47, N.341, V.342, W.452
Ligand excluded by PLIPIOD.33: 2 residues within 4Å:- Chain A: E.196, S.198
Ligand excluded by PLIP- 1 x BR: BROMIDE ION(Non-covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- 7 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.14: 6 residues within 4Å:- Chain A: R.76, N.80, P.149, K.150, R.418, N.419
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:R.76, A:N.80, A:K.150, A:K.150, A:R.418, A:R.418, A:N.419
PEG.15: 4 residues within 4Å:- Chain A: R.32, L.36, N.333, S.334
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.32, A:R.32, A:N.333
PEG.16: 3 residues within 4Å:- Chain A: R.245, I.387, K.388
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.245, A:K.388
PEG.17: 5 residues within 4Å:- Chain A: N.216, Q.217, A.219, W.220, A.225
No protein-ligand interaction detected (PLIP)PEG.18: 4 residues within 4Å:- Chain A: P.197, S.201, L.206
- Ligands: SCN.21
1 PLIP interactions:1 interactions with chain A- Water bridges: A:R.204
PEG.19: 5 residues within 4Å:- Chain A: S.459, P.461, T.469, V.470
- Ligands: IOD.9
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.459
- Water bridges: A:S.459
PEG.20: 3 residues within 4Å:- Chain A: K.472, P.500, M.501
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.472
- 5 x SCN: THIOCYANATE ION(Non-functional Binders)
SCN.21: 3 residues within 4Å:- Chain A: T.23, I.24
- Ligands: PEG.18
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:I.24
SCN.22: 3 residues within 4Å:- Chain A: R.453, L.458, P.509
1 PLIP interactions:1 interactions with chain A- Water bridges: A:R.453
SCN.23: 4 residues within 4Å:- Chain A: S.359, L.361, P.367, K.402
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.402
SCN.24: 2 residues within 4Å:- Chain A: H.377, H.429
No protein-ligand interaction detected (PLIP)SCN.31: 5 residues within 4Å:- Chain A: N.230, K.232, P.234, P.236, C.248
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.232
- 6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)(Non-functional Binders)
NAG.25: 4 residues within 4Å:- Chain A: N.95, R.96, I.315, Q.568
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.96
NAG.26: 5 residues within 4Å:- Chain A: N.241, A.244, W.384, K.388
- Ligands: NAG.27
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.241, A:A.244
NAG.27: 2 residues within 4Å:- Chain A: E.371
- Ligands: NAG.26
No protein-ligand interaction detected (PLIP)NAG.28: 3 residues within 4Å:- Chain A: N.332, S.334, V.335
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.332
- Water bridges: A:S.334, A:D.336
NAG.29: 7 residues within 4Å:- Chain A: N.205, S.208, L.210, A.214, V.215, Q.217
- Ligands: NAG.30
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:N.205, A:S.208, A:V.215, A:Q.217, A:Q.217
NAG.30: 1 residues within 4Å:- Ligands: NAG.29
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Viswanathan, V. et al., Structural evidence for the order of preference of inorganic substrates in mammalian heme peroxidases: crystal structure of the complex of lactoperoxidase with four inorganic substrates, SCN, I, Br and Cl. To Be Published
- Release Date
- 2024-03-13
- Peptides
- Lactoperoxidase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- monomer
- Ligands
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
- 1 x CA: CALCIUM ION(Non-covalent)
- 11 x IOD: IODIDE ION(Non-functional Binders)
- 1 x BR: BROMIDE ION(Non-covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- 7 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 5 x SCN: THIOCYANATE ION(Non-functional Binders)
- 6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Viswanathan, V. et al., Structural evidence for the order of preference of inorganic substrates in mammalian heme peroxidases: crystal structure of the complex of lactoperoxidase with four inorganic substrates, SCN, I, Br and Cl. To Be Published
- Release Date
- 2024-03-13
- Peptides
- Lactoperoxidase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A