SMTL ID : 7dqa.1

Cryo-EM structure of SARS-CoV2 RBD-ACE2 complex

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: H.374, H.378, E.402 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.374, A:H.378, A:E.402, A:E.402

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: R.169, W.477, W.478, D.499 Ligand excluded by PLIP

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 5 residues within 4Å: Chain A: H.417, S.420, D.543, S.545, N.546 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.420, A:S.420, A:S.420, A:N.546 NAG.4: 2 residues within 4Å: Chain A: N.90, T.92 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.90, A:T.92 NAG.5: 4 residues within 4Å: Chain A: N.322, M.323, T.324, Q.325 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.322 NAG.6: 3 residues within 4Å: Chain A: N.53, T.55, N.58 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.55, A:N.58 NAG.7: 4 residues within 4Å: Chain B: F.6, G.7, F.10, N.11 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:F.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, N. et al., Reduced graphene oxide membrane as supporting film for high-resolution cryo-EM. Biophys Rep (2022)

Release Date

2021-12-29

Peptides

Angiotensin-converting enzyme 2: A
Spike glycoprotein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Angiotensin-converting enzyme 2

Spike glycoprotein

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