SMTL ID : 7drb.2 (1 other biounit)

Crystal structure of plant receptor like protein RXEG1 with xyloglucanase XEG1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.1: 15 residues within 4Å: Chain A: S.152, K.155 Chain B: S.120, V.121, Y.141, N.143, S.145, S.146, D.167, Y.317, D.319, S.321, N.349, R.368, Y.370 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 2 residues within 4Å: Chain B: K.137, N.159 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 4 residues within 4Å: Chain B: N.73, T.75, T.76, I.80 No protein-ligand interaction detected (PLIP)

3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.3: 2 residues within 4Å: Chain B: Q.510, N.532 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.4: 2 residues within 4Å: Chain B: S.307, N.311 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.7: 5 residues within 4Å: Chain B: K.622, T.624, C.644, M.646, N.647 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN.5: 10 residues within 4Å: Chain B: Y.467, F.492, S.539, L.540, N.562, S.564, N.565, V.584, D.586, I.605 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.8: 3 residues within 4Å: Chain B: L.237, N.261, R.283 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.237 Hydrogen bonds: B:N.261, B:R.283 NAG.9: 2 residues within 4Å: Chain B: Q.456, N.481 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.456, B:N.481 NAG.10: 1 residues within 4Å: Chain B: N.660 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.684

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sun, Y. et al., Plant receptor-like protein activation by a microbial glycoside hydrolase. Nature (2022)

Release Date

2022-06-22

Peptides

Cell 12A endoglucanase: A
Membrane-localized LRR receptor-like protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Cell 12A endoglucanase

Membrane-localized LRR receptor-like protein

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