SMTL ID : 7w3v.1

Plant receptor like protein RXEG1 in complex with xyloglucanase XEG1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain B: N.73, T.75, T.76 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 4 residues within 4Å: Chain B: N.286, S.307, S.308, N.311 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 1 residues within 4Å: Chain B: N.481 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 5 residues within 4Å: Chain B: C.621, K.622, S.623, T.624, N.647 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN.2: 19 residues within 4Å: Chain A: S.152, T.153, G.154, K.155 Chain B: C.90, S.120, V.121, Y.141, N.143, S.145, I.165, D.167, L.189, Y.317, D.319, S.321, G.347, N.349, Y.370 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.155

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 2 residues within 4Å: Chain B: C.134, N.159 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.159 NAG.7: 1 residues within 4Å: Chain B: N.234 No protein-ligand interaction detected (PLIP) NAG.8: 2 residues within 4Å: Chain B: I.232, N.261 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.261 NAG.9: 2 residues within 4Å: Chain B: Q.510, N.532 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.532 NAG.10: 1 residues within 4Å: Chain B: N.542 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.542 NAG.11: 9 residues within 4Å: Chain B: P.515, S.539, L.540, N.562, S.564, V.584, D.586, I.605, Y.796 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:V.584, B:I.605, B:Y.796 Hydrogen bonds: B:S.539, B:S.564, B:D.586 NAG.12: 1 residues within 4Å: Chain B: N.591 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.567 NAG.13: 2 residues within 4Å: Chain B: N.660, S.684 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.660, B:S.684

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sun, Y. et al., Plant receptor-like protein activation by a microbial glycoside hydrolase. Nature (2022)

Release Date

2022-06-22

Peptides

Cell 12A endoglucanase: A
Membrane-localized LRR receptor-like protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Cell 12A endoglucanase

Membrane-localized LRR receptor-like protein

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