SMTL ID : 7w3x.1

Cryo-EM structure of plant receptor like protein RXEG1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN.1: 15 residues within 4Å: Chain A: S.120, V.121, Y.141, N.143, S.145, S.146, I.165, D.167, L.189, Y.317, D.319, S.321, N.349, R.368, Y.370 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 4 residues within 4Å: Chain A: N.286, S.307, S.308, N.311 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 5 residues within 4Å: Chain A: K.622, S.623, D.643, M.646, N.647 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.3: 12 residues within 4Å: Chain A: Y.467, F.492, P.515, S.539, L.540, N.562, S.564, V.584, D.586, I.605, Y.796, Y.798 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.5: 7 residues within 4Å: Chain A: S.826, S.827, N.848, S.850, R.851, D.872, V.894 No protein-ligand interaction detected (PLIP)

11 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 3 residues within 4Å: Chain A: N.73, T.75, I.80 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.73 NAG.7: 3 residues within 4Å: Chain A: C.134, Q.156, N.159 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Q.156 Hydrogen bonds: A:N.159 NAG.8: 2 residues within 4Å: Chain A: Q.204, N.234 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.204 NAG.9: 3 residues within 4Å: Chain A: I.232, A.233, N.261 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.261 NAG.10: 2 residues within 4Å: Chain A: S.480, N.481 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.480 NAG.11: 1 residues within 4Å: Chain A: N.532 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.532 NAG.12: 2 residues within 4Å: Chain A: N.518, N.542 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.542 NAG.13: 3 residues within 4Å: Chain A: Q.567, N.591, Q.612 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.567, A:Q.612 NAG.14: 2 residues within 4Å: Chain A: Q.745, N.767 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.745, A:N.767 NAG.15: 2 residues within 4Å: Chain A: K.866, N.888 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.866 NAG.16: 2 residues within 4Å: Chain A: G.832, N.855 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sun, Y. et al., Plant receptor-like protein activation by a microbial glycoside hydrolase. Nature (2022)

Release Date

2022-06-22

Peptides

Membrane-localized LRR receptor-like protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Membrane-localized LRR receptor-like protein

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