SMTL ID : 7dt6.1

Crystal structure of V30M mutated transthyretin in complex with purpurin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

homo-tetramer

Ligands

2 x 9TF: Purpurin(Non-covalent)

9TF.1: 14 residues within 4Å: Chain B: K.47, L.49, A.140, L.142, S.149, T.151, V.153 Chain D: K.47, L.49, A.140, L.142, S.149, T.151 Ligands: 9TF.2 10 PLIP interactions: 5 interactions with chain D, 5 interactions with chain B Hydrophobic interactions: D:L.49, D:L.142, B:L.49, B:A.140, B:L.142 Hydrogen bonds: D:K.47, D:K.47, B:K.47 Water bridges: D:K.47, B:K.47 9TF.2: 14 residues within 4Å: Chain B: K.47, L.49, A.140, L.142, S.149, T.151 Chain D: K.47, L.49, A.140, L.142, S.149, T.151, V.153 Ligands: 9TF.1 10 PLIP interactions: 5 interactions with chain D, 5 interactions with chain B Hydrophobic interactions: D:L.49, D:A.140, D:L.142, B:L.49, B:L.142 Hydrogen bonds: D:K.47, B:K.47, B:K.47 Water bridges: D:K.47, B:K.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kitakami, R. et al., Inhibitory activities of anthraquinone and xanthone derivatives against transthyretin amyloidogenesis. Bioorg.Med.Chem. (2021)

Release Date

2021-10-13

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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