SMTL ID : 7eri.1

Crystal structure of V30M-TTR in complex with triclabendazole

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

homo-tetramer

Ligands

4 x JA9: 6-[2,3-bis(chloranyl)phenoxy]-5-chloranyl-2-methylsulfanyl-1H-benzimidazole(Non-covalent)

JA9.1: 14 residues within 4Å: Chain A: K.47, L.49, A.140, A.141, L.142, S.149, T.151 Chain C: K.47, L.49, A.140, A.141, L.142, S.149 Ligands: JA9.3 12 PLIP interactions: 7 interactions with chain A, 5 interactions with chain C Hydrophobic interactions: A:K.47, A:L.49, A:A.140, C:L.49, C:A.140, C:L.142 Water bridges: A:K.47, C:K.47, C:K.47 Halogen bonds: A:A.140, A:A.141, A:S.149 JA9.2: 13 residues within 4Å: Chain B: K.47, L.49, A.140, S.149, T.151 Chain D: L.49, T.138, A.140, A.141, L.142, S.149, V.153 Ligands: JA9.4 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain B Hydrophobic interactions: D:A.140, D:L.142, B:L.49 JA9.3: 14 residues within 4Å: Chain A: K.47, L.49, A.140, A.141, L.142, S.149 Chain C: K.47, L.49, A.140, A.141, L.142, S.149, T.151 Ligands: JA9.1 12 PLIP interactions: 5 interactions with chain A, 7 interactions with chain C Hydrophobic interactions: A:L.49, A:A.140, A:L.142, C:K.47, C:L.49, C:A.140 Water bridges: A:K.47, A:K.47, C:K.47 Halogen bonds: C:A.140, C:A.141, C:S.149 JA9.4: 13 residues within 4Å: Chain B: L.49, T.138, A.140, A.141, L.142, S.149, V.153 Chain D: K.47, L.49, A.140, S.149, T.151 Ligands: JA9.2 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain D Hydrophobic interactions: B:A.140, B:L.142, D:L.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yokoyama, T. et al., Repositioning of the Anthelmintic Drugs Bithionol and Triclabendazole as Transthyretin Amyloidogenesis Inhibitors. J.Med.Chem. (2021)

Release Date

2021-11-24

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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