SMTL ID : 7erj.1

Crystal structure of V30M-TTR in complex with dichlorophen

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

homo-tetramer

Ligands

4 x JAL: 4-chloranyl-2-[(5-chloranyl-2-oxidanyl-phenyl)methyl]phenol(Non-covalent)

JAL.1: 15 residues within 4Å: Chain A: L.49, T.138, A.140, A.141, L.142, S.149, T.150, T.151, V.153 Chain C: K.47, L.49, A.140, A.141, L.142 Ligands: JAL.4 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain C Hydrophobic interactions: A:L.49, C:K.47, C:L.49, C:L.142, C:L.142 Halogen bonds: A:S.149 JAL.3: 13 residues within 4Å: Chain B: K.47, L.49, A.140, A.141, L.142, S.149, T.150, T.151, V.153 Chain D: L.49, A.140, L.142 Ligands: JAL.6 8 PLIP interactions: 4 interactions with chain B, 4 interactions with chain D Hydrophobic interactions: B:K.47, B:L.49, D:L.49, D:A.140, D:L.142, D:L.142 Halogen bonds: B:A.140, B:S.149 JAL.4: 15 residues within 4Å: Chain A: K.47, L.49, A.140, A.141, L.142 Chain C: L.49, T.138, A.140, A.141, L.142, S.149, T.150, T.151, V.153 Ligands: JAL.1 6 PLIP interactions: 2 interactions with chain C, 4 interactions with chain A Hydrophobic interactions: C:L.49, A:K.47, A:L.49, A:L.142, A:L.142 Halogen bonds: C:S.149 JAL.6: 13 residues within 4Å: Chain B: L.49, A.140, L.142 Chain D: K.47, L.49, A.140, A.141, L.142, S.149, T.150, T.151, V.153 Ligands: JAL.3 8 PLIP interactions: 4 interactions with chain D, 4 interactions with chain B Hydrophobic interactions: D:K.47, D:L.49, B:L.49, B:A.140, B:L.142, B:L.142 Halogen bonds: D:A.140, D:S.149

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 3 residues within 4Å: Chain B: E.98, N.130, D.131 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.98, H2O.3, H2O.4 CA.5: 3 residues within 4Å: Chain D: E.98, N.130, D.131 3 PLIP interactions: 1 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:E.98, H2O.7, H2O.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yokoyama, T. et al., Repositioning of the Anthelmintic Drugs Bithionol and Triclabendazole as Transthyretin Amyloidogenesis Inhibitors. J.Med.Chem. (2021)

Release Date

2021-11-24

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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