SMTL ID : 7f3q.1

SARS-CoV-2 RBD in complex with A5-10 Fab and A34-2 Fab

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: F.338, F.342, N.343 Chain D: Y.102 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain D Hydrophobic interactions: A:F.342 Hydrogen bonds: A:N.343, D:Y.102

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.2: 4 residues within 4Å: Chain B: S.159, S.162, N.203, K.212 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.159, B:N.203 Salt bridges: B:K.212, B:D.214

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dou, Y. et al., Development of neutralizing antibodies against SARS-CoV-2, using a high-throughput single-B-cell cloning method. Antib Ther (2023)

Release Date

2022-06-22

Peptides

Spike glycoprotein: A
Heavy chain of A34-2 Fab: B
Light chain of A34-2 Fab: C
Heavy chain of A5-10 Fab: D
Light chain of A5-10 Fab: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

D
C

E
B

Spike glycoprotein

Heavy chain of A34-2 Fab

Light chain of A34-2 Fab

Heavy chain of A5-10 Fab

Light chain of A5-10 Fab

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