SMTL ID : 7fx5.1

Crystal Structure of human FABP4 in complex with 5-[[3-(3-cyclopropyl-1,2,4-oxadiazol-5-yl)-6,6-difluoro-5,7-dihydro-4H-1-benzothiophen-2-yl]carbamoyl]-3,6-dihydro-2H-pyran-4-carboxylic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.12 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.112, D.115, R.134 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.115 Water bridges: A:R.112, A:R.112, A:R.134, A:R.134 Salt bridges: A:R.112, A:R.134 SO4.2: 5 residues within 4Å: Chain A: S.17, E.18, N.19, F.20, D.21 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.17, A:S.17, A:F.20, A:D.21 Water bridges: A:N.19, A:N.19, A:D.22

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 5 residues within 4Å: Chain A: T.64, E.65, I.66, E.76, V.77 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.77 Water bridges: A:E.65

1 x Q4X: 5-{[(3M)-3-(3-cyclopropyl-1,2,4-oxadiazol-5-yl)-6,6-difluoro-4,5,6,7-tetrahydro-1-benzothiophen-2-yl]carbamoyl}-3,6-dihydro-2H-pyran-4-carboxylic acid(Non-covalent)

Q4X.4: 24 residues within 4Å: Chain A: F.20, Y.23, M.24, V.27, V.29, T.33, V.36, A.37, A.40, P.42, S.57, S.59, T.60, F.61, K.62, A.79, D.80, R.82, I.108, R.110, V.119, C.121, R.130, Y.132 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:F.20, A:Y.23, A:V.29, A:A.37, A:A.40, A:K.62, A:A.79, A:V.119 Hydrogen bonds: A:R.130, A:Y.132 Water bridges: A:S.57, A:R.110, A:R.110 Salt bridges: A:R.130 Halogen bonds: A:V.36, A:T.60

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.5: 9 residues within 4Å: Chain A: I.55, K.56, S.57, T.64, E.65, I.66, E.76, H.97, R.110 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.110

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 3 residues within 4Å: Chain A: L.70, T.89, L.90 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Obst, U. et al., Crystal Structure of a human FABP4 complex. To be published

Release Date

2023-06-14

Peptides

Fatty acid-binding protein, adipocyte: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Fatty acid-binding protein, adipocyte

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