SMTL ID : 7fxv.1

Crystal Structure of human FABP4 in complex with 6-[(4-methoxyphenyl)methyl]-2H-1,2,4-triazine-3,5-dithione

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 0.88 Å

Oligo State

monomer

Ligands

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 8 residues within 4Å: Chain A: F.20, Y.23, I.108, R.110, V.119, C.121, R.130 Ligands: U8H.2 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Q.99 DMS.4: 7 residues within 4Å: Chain A: H.3, C.5, V.48, G.50, D.51, I.53, L.70 No protein-ligand interaction detected (PLIP)

1 x U8H: 6-[(4-methoxyphenyl)methyl]-1,2,4-triazine-3,5(2H,4H)-dithione(Non-covalent)

U8H.2: 18 residues within 4Å: Chain A: F.20, Y.23, M.24, V.27, V.29, A.37, A.40, P.42, S.57, F.61, A.79, D.80, R.82, R.110, V.119, R.130, Y.132 Ligands: DMS.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.20, A:A.37, A:A.79 Hydrogen bonds: A:S.57, A:R.130, A:R.130, A:Y.132

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: T.64, E.65, I.66, E.76, V.77 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.77 Water bridges: A:E.65, A:E.65

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 3 residues within 4Å: Chain A: R.112, D.115, R.134 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.115 Water bridges: A:D.115, A:R.134 Salt bridges: A:R.112, A:R.134 SO4.6: 5 residues within 4Å: Chain A: S.17, E.18, N.19, F.20, D.21 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.17, A:S.17, A:F.20, A:D.21 Water bridges: A:E.18, A:N.19, A:D.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Obst, U. et al., Crystal Structure of a human FABP4 complex. To be published

Release Date

2023-06-14

Peptides

Fatty acid-binding protein, adipocyte: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Fatty acid-binding protein, adipocyte

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