SMTL ID : 7g20.1

Crystal Structure of human FABP4 in complex with 1-[(4-methoxyphenyl)methyl]-5-propan-2-yl-5-prop-2-enyl-1,3-diazinane-2,4,6-trione

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.12 Å

Oligo State

monomer

Ligands

1 x WQL: (5S)-1-[(4-methoxyphenyl)methyl]-5-(propan-2-yl)-5-(prop-2-en-1-yl)-1,3-diazinane-2,4,6-trione(Non-covalent)

WQL.1: 20 residues within 4Å: Chain A: F.20, Y.23, M.24, V.27, V.29, A.37, P.42, N.43, M.44, S.57, F.61, A.79, D.80, R.82, I.108, R.110, V.119, C.121, R.130, Y.132 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.20, A:P.42, A:A.79, A:I.108 Hydrogen bonds: A:R.130, A:R.130, A:Y.132 Water bridges: A:S.57, A:R.110 pi-Stacking: A:F.20

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.112, D.115, R.134 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.115 Water bridges: A:R.134, A:R.134 Salt bridges: A:R.112, A:R.134 SO4.5: 5 residues within 4Å: Chain A: S.17, E.18, N.19, F.20, D.21 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.17, A:S.17, A:F.20, A:D.21 Water bridges: A:E.18, A:N.19, A:D.22

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 7 residues within 4Å: Chain A: V.98, S.105, T.106, T.107, V.122, M.123, K.124 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.105, A:S.105, A:T.107, A:T.107 Water bridges: A:K.124

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 6 residues within 4Å: Chain A: T.64, E.65, I.66, E.76, V.77, T.78 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.77 Water bridges: A:T.64, A:E.65, A:E.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Obst, U. et al., Crystal Structure of a human FABP4 complex. To be published

Release Date

2023-06-14

Peptides

Fatty acid-binding protein, adipocyte: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Fatty acid-binding protein, adipocyte

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