SMTL ID : 7gzw.1

Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0012338-001

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.15 Å

Oligo State

monomer

Ligands

1 x 01: (3M)-3-(4-{[(1S)-1-(1,1-dioxo-1,2,3,4-tetrahydro-1lambda~6~-benzothiopyran-7-yl)-2-methylpropyl]amino}-7H-pyrrolo[2,3-d]pyrimidin-6-yl)-N-methylbenzamide

01.1: 18 residues within 4Å: Chain A: A.21, D.22, I.23, V.24, E.25, A.38, G.48, V.49, A.52, L.126, A.129, G.130, I.131, F.132, A.154, F.156, D.157, L.160 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:A.38, A:A.52, A:A.129, A:F.132, A:F.156, A:D.157, A:L.160 Hydrogen bonds: A:D.22, A:D.22, A:D.22, A:I.23, A:F.156 Water bridges: A:F.156 pi-Stacking: A:F.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aschenbrenner, J.C. et al., Group deposition of SARS-CoV-2 NSP3 Macrodomain in complex with inhibitors from the ASAP AViDD centre. To Be Published

Release Date

2024-05-15

Peptides

Papain-like protease nsp3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Papain-like protease nsp3

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