SMTL ID : 7h03.1

Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0000452-001

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.22 Å

Oligo State

monomer

Ligands

1 x 01: N-[(2R)-1,1-difluoro-3-methylbutan-2-yl]-7H-pyrrolo[2,3-d]pyrimidin-4-amine

01.1: 11 residues within 4Å: Chain A: A.21, D.22, I.23, V.49, A.52, L.126, A.129, A.154, F.156, D.157, L.160 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.49, A:A.129, A:F.156, A:L.160 Hydrogen bonds: A:D.22, A:I.23, A:F.156

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.2: 10 residues within 4Å: Chain A: A.38, N.40, K.44, G.47, A.50, S.128, A.129, G.130, I.131, F.132 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.40, A:S.128, A:G.130, A:F.132 Water bridges: A:V.49, A:A.129, A:A.129, A:I.131

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aschenbrenner, J.C. et al., Group deposition of SARS-CoV-2 NSP3 Macrodomain in complex with inhibitors from the ASAP AViDD centre. To Be Published

Release Date

2024-05-15

Peptides

Papain-like protease nsp3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Papain-like protease nsp3

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