SMTL ID : 7h13.1

Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0013385-001

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.22 Å

Oligo State

monomer

Ligands

1 x 01: 7-[(1R)-1-{[(6M)-6-(3,3-dimethyl-2-oxo-2,3-dihydro-1H-indol-5-yl)-7H-pyrrolo[2,3-d]pyrimidin-4-yl]amino}-2-methylpropyl]-3,4-dihydro-1lambda~6~-benzothiopyran-1,1(2H)-dione

01.1: 16 residues within 4Å: Chain A: A.21, D.22, I.23, A.38, G.48, V.49, A.52, L.126, A.129, G.130, I.131, F.132, A.154, F.156, D.157, L.160 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:A.38, A:A.52, A:F.132, A:F.156, A:D.157, A:L.160 Hydrogen bonds: A:I.23, A:F.156 Water bridges: A:K.55, A:K.55, A:F.156 pi-Stacking: A:F.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aschenbrenner, J.C. et al., Group deposition of SARS-CoV-2 NSP3 Macrodomain in complex with inhibitors from the ASAP AViDD centre. To Be Published

Release Date

2024-05-15

Peptides

Papain-like protease nsp3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Papain-like protease nsp3

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