SMTL ID : 7hsx.1

PanDDA analysis group deposition -- Crystal Structure of FatA in complex with Z274575916

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

homo-dimer

Ligands

2 x WKS: 2,4-dimethyl-6-(piperazin-1-yl)pyrimidine(Non-covalent)

WKS.1: 10 residues within 4Å: Chain A: V.69, T.70, V.124, M.126, R.131, L.133, Y.224, R.225, E.227 Ligands: SO4.4 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.124, A:L.133, A:E.227 Water bridges: A:R.131, A:R.131 WKS.6: 10 residues within 4Å: Chain B: V.69, T.70, V.124, M.126, R.131, L.133, Y.224, R.225, E.227 Ligands: SO4.9 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:V.124, B:E.227 Hydrogen bonds: B:R.131 Water bridges: B:R.226

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: S.3, L.4, Y.11, S.47 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.4, A:S.47, A:S.47 SO4.3: 7 residues within 4Å: Chain A: W.68, C.93, T.101, R.102, R.103, W.123, Y.144 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.68, A:T.101, A:Y.144 Salt bridges: A:R.103 SO4.4: 5 residues within 4Å: Chain A: R.131, R.226, E.227, Q.229 Ligands: WKS.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.227, A:Q.229 Salt bridges: A:R.131, A:R.226 SO4.5: 4 residues within 4Å: Chain A: T.29, V.30, Y.80, W.283 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.30 Water bridges: A:L.217 SO4.7: 7 residues within 4Å: Chain B: W.68, C.93, T.101, R.102, R.103, W.123, Y.144 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.101 Salt bridges: B:R.103 SO4.8: 5 residues within 4Å: Chain B: T.29, V.30, Y.80, L.217, W.283 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:V.30 Water bridges: B:A.28, B:E.31, B:L.217 SO4.9: 5 residues within 4Å: Chain B: R.131, R.226, E.227, Q.229 Ligands: WKS.6 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.227 Salt bridges: B:R.131, B:R.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kot, E. et al., PanDDA analysis group deposition. To Be Published

Release Date

2025-08-13

Peptides

Oleoyl-acyl carrier protein thioesterase 1, chloroplastic: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Oleoyl-acyl carrier protein thioesterase 1, chloroplastic

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