SMTL ID : 7jg0.1

Human GAR transformylase in complex with GAR substrate and AGF102 inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

homo-dimer

Ligands

2 x GAR: GLYCINAMIDE RIBONUCLEOTIDE(Non-covalent)

GAR.1: 15 residues within 4Å: Chain A: T.11, G.12, S.13, N.14, A.87, G.88, F.89, M.90, I.108, H.109, P.110, G.118, K.171, E.174 Ligands: V97.2 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:T.11, A:G.12, A:S.13, A:S.13, A:N.14, A:N.14, A:I.108, A:I.108, A:G.118, A:E.174 Water bridges: A:T.11, A:L.15, A:A.87, A:G.88, A:K.171 Salt bridges: A:K.171 GAR.3: 15 residues within 4Å: Chain B: T.11, G.12, S.13, N.14, A.87, G.88, F.89, M.90, I.108, H.109, P.110, G.118, K.171, E.174 Ligands: V97.4 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:T.11, B:G.12, B:S.13, B:S.13, B:N.14, B:N.14, B:I.108, B:I.108, B:H.109, B:G.118, B:E.174 Water bridges: B:L.15, B:A.87, B:G.88, B:K.171 Salt bridges: B:K.171

2 x V97: N-{5-[4-(2-amino-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidin-6-yl)butyl]thiophene-2-carbonyl}-L-glutamic acid(Non-covalent)

V97.2: 20 residues within 4Å: Chain A: K.38, H.59, R.65, L.86, F.89, M.90, R.91, I.92, L.93, V.98, N.107, S.119, H.138, V.140, A.141, E.142, D.143, V.144, D.145 Ligands: GAR.1 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.86, A:I.92, A:V.140 Hydrogen bonds: A:M.90, A:I.92, A:L.93, A:L.93, A:A.141, A:D.145 Water bridges: A:N.37, A:A.141, A:A.146 Salt bridges: A:K.38, A:H.59, A:R.65, A:R.91 V97.4: 20 residues within 4Å: Chain B: K.38, H.59, R.65, L.86, F.89, M.90, R.91, I.92, L.93, V.98, N.107, S.119, H.138, V.140, A.141, E.142, D.143, V.144, D.145 Ligands: GAR.3 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:L.86, B:I.92, B:V.140 Hydrogen bonds: B:M.90, B:I.92, B:L.93, B:L.93, B:A.141, B:D.145 Water bridges: B:N.37, B:H.138, B:A.141 Salt bridges: B:K.38, B:H.59, B:R.65, B:R.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wallace-Povirk, A. et al., Discovery of 6-substituted thieno[2,3-d]pyrimidine analogs as dual inhibitors of glycinamide ribonucleotide formyltransferase and 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase in de novo purine nucleotide biosynthesis in folate receptor expressing human tumors. Bioorg.Med.Chem. (2021)

Release Date

2021-03-31

Peptides

Trifunctional purine biosynthetic protein adenosine-3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Trifunctional purine biosynthetic protein adenosine-3

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