SMTL ID : 7jg3.1

Human GAR transformylase in complex with GAR substrate and AGF103 inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

monomer

Ligands

1 x GAR: GLYCINAMIDE RIBONUCLEOTIDE(Non-covalent)

GAR.1: 16 residues within 4Å: Chain A: T.11, G.12, S.13, N.14, A.87, G.88, F.89, M.90, I.108, H.109, P.110, G.118, S.119, K.171, E.174 Ligands: V9A.2 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:T.11, A:G.12, A:S.13, A:S.13, A:N.14, A:N.14, A:I.108, A:G.118, A:E.174 Water bridges: A:T.11, A:T.11, A:L.15, A:A.87, A:G.88, A:I.108, A:K.171 Salt bridges: A:K.171

1 x V9A: N-{5-[4-(2-amino-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidin-6-yl)butyl]furan-2-carbonyl}-L-glutamic acid(Non-covalent)

V9A.2: 17 residues within 4Å: Chain A: R.65, L.86, F.89, M.90, R.91, I.92, L.93, V.98, N.107, H.138, V.140, A.141, E.142, D.143, V.144, D.145 Ligands: GAR.1 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.86, A:V.140 Hydrogen bonds: A:M.90, A:I.92, A:L.93, A:L.93, A:E.142, A:D.145 Water bridges: A:M.90, A:A.141, A:A.146 Salt bridges: A:K.38, A:R.65, A:R.91

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 5 residues within 4Å: Chain A: V.98, W.101, N.102, M.105, V.140 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.101 Water bridges: A:G.103, A:G.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wallace-Povirk, A. et al., Discovery of 6-substituted thieno[2,3-d]pyrimidine analogs as dual inhibitors of glycinamide ribonucleotide formyltransferase and 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase in de novo purine nucleotide biosynthesis in folate receptor expressing human tumors. Bioorg.Med.Chem. (2021)

Release Date

2021-03-31

Peptides

Trifunctional purine biosynthetic protein adenosine-3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Trifunctional purine biosynthetic protein adenosine-3

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