SMTL ID : 7jg4.1

Human GAR transformylase in complex with GAR substrate and AGF131 inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.46 Å

Oligo State

monomer

Ligands

1 x GAR: GLYCINAMIDE RIBONUCLEOTIDE(Non-covalent)

GAR.1: 17 residues within 4Å: Chain A: T.11, G.12, S.13, N.14, A.87, G.88, F.89, M.90, I.108, H.109, P.110, G.118, S.119, K.171, E.174 Ligands: V9V.2, NA.3 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:T.11, A:G.12, A:S.13, A:S.13, A:N.14, A:N.14, A:I.108, A:I.108, A:H.109, A:G.118, A:E.174 Water bridges: A:A.87, A:G.88, A:G.88 Salt bridges: A:K.171

1 x V9V: N-(5-{3-[(1S,7R,8R,9S)-4-amino-2-oxo-7lambda~4~-thia-3,5-diazatetracyclo[4.3.0.0~1,7~.0~7,9~]nona-3,5-dien-8-yl]propyl}thiophene-2-carbonyl)-L-glutamic acid(Non-covalent)

V9V.2: 18 residues within 4Å: Chain A: R.65, L.86, F.89, M.90, R.91, I.92, L.93, V.98, N.107, G.118, H.138, V.140, A.141, E.142, V.144, D.145 Ligands: GAR.1, NA.3 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.86, A:V.140 Hydrogen bonds: A:M.90, A:I.92, A:L.93, A:L.93, A:A.141, A:D.145 Water bridges: A:A.141, A:A.146 Salt bridges: A:K.38, A:R.65, A:R.91, A:R.91

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 5 residues within 4Å: Chain A: N.107, H.109, D.145 Ligands: GAR.1, V9V.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.107, A:H.109, A:D.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wallace-Povirk, A. et al., Discovery of 6-substituted thieno[2,3-d]pyrimidine analogs as dual inhibitors of glycinamide ribonucleotide formyltransferase and 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase in de novo purine nucleotide biosynthesis in folate receptor expressing human tumors. Bioorg.Med.Chem. (2021)

Release Date

2021-03-31

Peptides

Trifunctional purine biosynthetic protein adenosine-3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Trifunctional purine biosynthetic protein adenosine-3

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