SMTL ID : 7jlm.1 (1 other biounit)

Crystal structure of Bacillus subtilis UppS in complex with MAC-0547630

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 6 residues within 4Å: Chain A: D.40, N.88, K.90, R.208, R.214, S.216 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:D.40, A:N.88, A:S.216 Water bridges: A:D.40, A:K.90, A:K.90 Salt bridges: A:K.90, A:R.208, A:R.208, A:R.214 CIT.3: 6 residues within 4Å: Chain B: D.40, N.88, K.90, R.208, R.214, S.216 10 PLIP interactions: 1 interactions with chain A, 9 interactions with chain B Water bridges: A:R.255, B:D.40, B:K.90 Hydrogen bonds: B:D.40, B:N.88, B:S.216 Salt bridges: B:K.90, B:R.208, B:R.208, B:R.214

2 x V07: 7-(azepan-1-yl)-3-(4-fluorophenyl)-5-methylpyrazolo[1,5-a]pyrimidine(Non-covalent)

V07.2: 17 residues within 4Å: Chain A: M.39, N.42, H.57, G.60, M.61, A.83, F.84, L.99, L.102, P.103, F.106, L.107, I.123, I.138, F.155, L.157, W.235 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.84, A:L.102, A:P.103, A:P.103, A:F.106, A:I.123, A:F.155, A:F.155, A:L.157 pi-Stacking: A:F.155 V07.4: 17 residues within 4Å: Chain B: M.39, N.42, H.57, G.60, M.61, A.83, F.84, L.99, L.102, P.103, F.106, L.107, I.123, I.138, F.155, L.157, W.235 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:F.84, B:L.102, B:P.103, B:P.103, B:F.106, B:I.123, B:F.155, B:F.155, B:L.157 pi-Stacking: B:F.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Workman, S.D. et al., Structural Insights into the Inhibition of Undecaprenyl Pyrophosphate Synthase from Gram-Positive Bacteria. J.Med.Chem. (2021)

Release Date

2021-08-04

Peptides

Isoprenyl transferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Isoprenyl transferase

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