SMTL ID : 7jlm.2 (1 other biounit)

Crystal structure of Bacillus subtilis UppS in complex with MAC-0547630

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 9 residues within 4Å: Chain A: M.39, D.40, G.41, N.42, G.43, R.44, R.53, H.57, L.99 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:D.40, A:G.41, A:N.42, A:N.42, A:G.43, A:R.44, A:R.53 Water bridges: A:M.39 Salt bridges: A:H.57 CIT.3: 9 residues within 4Å: Chain B: M.39, D.40, G.41, N.42, G.43, R.44, R.53, H.57, L.99 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:D.40, B:D.40, B:G.41, B:N.42, B:N.42, B:G.43, B:R.44, B:R.53 Water bridges: B:M.39 Salt bridges: B:H.57

2 x V07: 7-(azepan-1-yl)-3-(4-fluorophenyl)-5-methylpyrazolo[1,5-a]pyrimidine(Non-covalent)

V07.2: 19 residues within 4Å: Chain A: M.39, N.42, H.57, G.60, M.61, V.64, A.83, F.84, L.99, M.100, L.102, P.103, F.106, L.107, I.123, I.138, F.155, L.157, W.235 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:M.39, A:V.64, A:A.83, A:F.84, A:L.102, A:P.103, A:F.106, A:L.107, A:I.123, A:F.155, A:F.155, A:L.157, A:L.157 pi-Stacking: A:F.155 V07.4: 19 residues within 4Å: Chain B: M.39, N.42, H.57, G.60, M.61, V.64, A.83, F.84, L.99, M.100, L.102, P.103, F.106, L.107, I.123, I.138, F.155, L.157, W.235 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:M.39, B:V.64, B:A.83, B:F.84, B:L.102, B:P.103, B:F.106, B:L.107, B:I.123, B:F.155, B:F.155, B:L.157, B:L.157 pi-Stacking: B:F.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Workman, S.D. et al., Structural Insights into the Inhibition of Undecaprenyl Pyrophosphate Synthase from Gram-Positive Bacteria. J.Med.Chem. (2021)

Release Date

2021-08-04

Peptides

Isoprenyl transferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

Isoprenyl transferase

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