SMTL ID : 7jlr.1

Crystal structure of Bacillus subtilis UppS in complex with JPD447

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x V0D: 7-(azepan-1-yl)-5-ethyl-3-(4-fluorophenyl)pyrazolo[1,5-a]pyrimidine(Non-covalent)

V0D.1: 16 residues within 4Å: Chain A: M.39, N.42, H.57, G.60, M.61, V.64, A.83, L.99, L.102, P.103, F.106, L.107, I.138, F.155, L.157, W.235 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:M.39, A:V.64, A:L.99, A:L.102, A:P.103, A:F.106, A:L.107, A:F.155, A:L.157 pi-Stacking: A:F.155 V0D.2: 16 residues within 4Å: Chain B: M.39, N.42, H.57, G.60, M.61, V.64, A.83, L.99, L.102, P.103, F.106, L.107, I.138, F.155, L.157, W.235 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:M.39, B:V.64, B:L.99, B:L.102, B:P.103, B:F.106, B:L.107, B:F.155, B:L.157 pi-Stacking: B:F.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Workman, S.D. et al., Structural Insights into the Inhibition of Undecaprenyl Pyrophosphate Synthase from Gram-Positive Bacteria. J.Med.Chem. (2021)

Release Date

2021-08-04

Peptides

Isoprenyl transferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Isoprenyl transferase

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