SMTL ID : 7jmj.1

Functional Pathways of Biomolecules Retrieved from Single-particle Snapshots - Frame 37 - State 5 (S5)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain B: C.4608, I.4610, C.4611, H.4628, H.4633 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.4608, B:C.4611, B:H.4628, B:H.4633 ZN.3: 5 residues within 4Å: Chain C: C.4608, I.4610, C.4611, H.4628, H.4633 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.4608, C:C.4611, C:H.4628, C:H.4633 ZN.5: 5 residues within 4Å: Chain E: C.4608, I.4610, C.4611, H.4628, H.4633 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.4608, E:C.4611, E:H.4628, E:H.4633 ZN.7: 5 residues within 4Å: Chain G: C.4608, I.4610, C.4611, H.4628, H.4633 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.4608, G:C.4611, G:H.4628, G:H.4633

4 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain B: E.3543, E.3617, T.4651, E.4652, H.4653 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.3543, B:T.4651 CA.4: 5 residues within 4Å: Chain C: E.3543, E.3617, T.4651, E.4652, H.4653 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:E.3543, C:T.4651 CA.6: 5 residues within 4Å: Chain E: E.3543, E.3617, T.4651, E.4652, H.4653 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:E.3543, E:T.4651 CA.8: 5 residues within 4Å: Chain G: E.3543, E.3617, T.4651, E.4652, H.4653 2 PLIP interactions: 2 interactions with chain G Metal complexes: G:E.3543, G:T.4651

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dashti, A. et al., Retrieving functional pathways of biomolecules from single-particle snapshots. Nat Commun (2020)

Release Date

2020-08-12

Peptides

Peptidyl-prolyl cis-trans isomerase FKBP1B: ADFH
ryanodine receptor type 1: BCEG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
F

F
H

H
J

B
B

C
E

E
G

G
I

Membrane

We predict this structure to be a membrane protein.
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Peptidyl-prolyl cis-trans isomerase FKBP1B

ryanodine receptor type 1

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