SMTL ID : 7jmo.1

Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing antibody COVA2-04

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.36 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: G.21, N.25, V.49 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.49 Hydrogen bonds: A:N.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, N.C. et al., An Alternative Binding Mode of IGHV3-53 Antibodies to the SARS-CoV-2 Receptor Binding Domain. Cell Rep (2020)

Release Date

2020-08-26

Peptides

Spike protein S1: A
COVA2-04 heavy chain: B
COVA2-04 light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Spike protein S1

COVA2-04 heavy chain

COVA2-04 light chain

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