SMTL ID : 7jx3.1

Mapping neutralizing and immunodominant sites on the SARS-CoV-2 spike receptor-binding domain by structure-guided high-resolution serology

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

hetero-1-1-1-1-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: Y.50 Chain G: G.12, F.15, N.16 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain G Hydrogen bonds: A:Y.50 Hydrophobic interactions: G:F.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Piccoli, L. et al., Mapping Neutralizing and Immunodominant Sites on the SARS-CoV-2 Spike Receptor-Binding Domain by Structure-Guided High-Resolution Serology. Cell (2020)

Release Date

2020-10-14

Peptides

Light chain of Fab domain of monoclonal antibody S309: A
Heavy chain of Fab domain of monoclonal antibody S309: B
Light chain of Fab domain of monoclonal antibody S2H14: C
Heavy chain of Fab domain of monoclonal antibody S2H14: D
Light chain of Fab domain of monoclonal antibody S304: E
Heavy chain of Fab domain of monoclonal antibody S304: F
Spike protein S1: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

C
D

D
C

E
L

F
H

G
R

Light chain of Fab domain of monoclonal antibody S309

Heavy chain of Fab domain of monoclonal antibody S309

Light chain of Fab domain of monoclonal antibody S2H14

Heavy chain of Fab domain of monoclonal antibody S2H14

Light chain of Fab domain of monoclonal antibody S304

Heavy chain of Fab domain of monoclonal antibody S304

Spike protein S1

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