SMTL ID : 7k66.1

Structure of Blood Coagulation Factor VIII in Complex with an Anti-C1 Domain Pathogenic Antibody Inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.92 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.1: 7 residues within 4Å: Chain A: V.1006, Q.1009, N.1072, Q.1073, K.1154, N.1253, N.1276 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.1072, A:K.1154 Hydrophobic interactions: A:Q.1073

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 2 residues within 4Å: Chain A: N.945 Chain B: K.65 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.65

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain A: R.36, V.258, N.259 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:R.36, A:V.258 Hydrogen bonds: A:R.36, A:N.259

1 x CU: COPPER (II) ION(Non-covalent)

CU.4: 5 residues within 4Å: Chain A: H.1089, C.1135, I.1137, H.1140, M.1145 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.1089, A:C.1135, A:H.1140

1 x CA: CALCIUM ION(Non-covalent)

CA.5: 6 residues within 4Å: Chain A: K.127, E.130, E.142, K.143, D.145, D.146 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:K.127, A:E.142, A:D.145, A:D.146

1 x ZN: ZINC ION(Non-covalent)

ZN.6: 6 residues within 4Å: Chain A: H.252, V.286, H.287, C.330, H.337, M.340 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.287, A:C.330, A:H.337

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gish, J.S. et al., Structure of blood coagulation factor VIII in complex with an anti-C1 domain pathogenic antibody inhibitor. Blood (2021)

Release Date

2020-10-14

Peptides

Coagulation factor VIII,Coagulation factor VIII,Coagulation factor VIII,Coagulation factor VIII: A
2A9 heavy chain: B
2A9 light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Coagulation factor VIII,Coagulation factor VIII,Coagulation factor VIII,Coagulation factor VIII

2A9 heavy chain

2A9 light chain

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