SMTL ID : 7kbt.1

Factor VIII in complex with the anti-C2 domain antibody, G99

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.15 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain A: L.887, Q.1073, K.1154, N.1253, N.1276, P.1277 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.1154, A:K.1154 NAG-NAG.2: 1 residues within 4Å: Chain A: N.259 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 1 residues within 4Å: Chain A: N.945 No protein-ligand interaction detected (PLIP)

1 x CU: COPPER (II) ION(Non-covalent)

CU.4: 5 residues within 4Å: Chain A: H.1089, S.1090, C.1135, I.1137, H.1140 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.1089, A:C.1135

1 x ZN: ZINC ION(Non-covalent)

ZN.5: 5 residues within 4Å: Chain A: H.287, C.330, I.332, H.337, M.340 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.287, A:C.330, A:H.337

1 x CA: CALCIUM ION(Non-covalent)

CA.6: 4 residues within 4Å: Chain A: K.127, E.142, D.145, D.146 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:K.127, A:E.142, A:D.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ronayne, E.K. et al., Structure of Blood Coagulation Factor VIII in Complex With an Anti-C2 Domain Non-Classical, Pathogenic Antibody Inhibitor. Front Immunol (2021)

Release Date

2020-11-18

Peptides

Coagulation factor VIII,Coagulation factor VIII,Coagulation factor VIII,Coagulation factor VIII,Coagulation factor VIII: A
G99 heavy chain: B
G99 light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

C
F

Coagulation factor VIII,Coagulation factor VIII,Coagulation factor VIII,Coagulation factor VIII,Coagulation factor VIII

G99 heavy chain

G99 light chain

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