- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.21 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x WPM: N~2~-methyl-N~2~-[(5-methyl-1H-indazol-7-yl)sulfonyl]-N-(1-methyl-2-oxo-1,2-dihydropyridin-4-yl)glycinamide(Non-covalent)
WPM.2: 14 residues within 4Å:- Chain A: Y.18, L.44, R.95, G.98, V.99, F.101, E.323
- Chain B: A.383, N.384, A.385, H.445, E.450, N.465, F.466
7 PLIP interactions:2 interactions with chain A, 5 interactions with chain B- Hydrogen bonds: A:R.95, B:A.383, B:N.465
- Water bridges: A:R.95, B:H.445, B:H.445
- Hydrophobic interactions: B:F.466
WPM.11: 14 residues within 4Å:- Chain A: A.383, N.384, A.385, H.445, E.450, N.465, F.466
- Chain B: Y.18, L.44, R.95, G.98, V.99, F.101, E.323
7 PLIP interactions:6 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:F.466
- Hydrogen bonds: A:A.383, A:N.465, B:R.95
- Water bridges: A:N.384, A:A.385, A:A.385
- 9 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 7 residues within 4Å:- Chain A: K.37, V.42, T.144, G.145, S.146, N.274
- Ligands: FAD.1
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:K.37, A:K.37, A:S.146, A:N.274
- Water bridges: A:S.146, A:Y.163
GOL.4: 8 residues within 4Å:- Chain A: Q.453, E.454, H.457, I.464, N.465
- Chain B: E.323, A.324, V.327
9 PLIP interactions:5 interactions with chain A, 4 interactions with chain B- Hydrogen bonds: A:E.454, A:N.465, B:E.323
- Water bridges: A:Q.453, A:Q.453, A:E.454, B:E.323, B:E.323, B:A.324
GOL.5: 6 residues within 4Å:- Chain A: S.436, E.437, R.440
- Chain B: E.337, L.339, W.431
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.437, A:E.437, A:R.440
GOL.6: 5 residues within 4Å:- Chain A: A.272, P.273, N.274, V.275, E.276
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:V.275, A:E.276
GOL.7: 8 residues within 4Å:- Chain A: K.52, A.183, E.187, L.318, A.350, T.351, F.352
- Ligands: FAD.1
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.52, A:E.187
- Water bridges: A:A.350, A:A.350
GOL.8: 6 residues within 4Å:- Chain A: R.23, V.327, E.331
- Chain B: H.457, G.461, H.462
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:E.331, B:H.462, B:H.462
GOL.9: 5 residues within 4Å:- Chain A: L.341, G.342, D.343, M.346, Q.429
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.343, A:Q.429
- Water bridges: A:M.346, A:Q.429
GOL.12: 7 residues within 4Å:- Chain A: E.323, A.324
- Chain B: Q.453, E.454, H.457, I.464, N.465
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:Q.453, B:N.465
- Water bridges: A:A.324, A:A.324
GOL.13: 6 residues within 4Å:- Chain B: R.149, F.271, P.273, R.290, G.314, Q.317
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:R.149, B:R.149, B:F.271, B:R.290, B:R.290, B:Q.317
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ginn, J. et al., Whole Cell Active Inhibitors of Mycobacterial Lipoamide Dehydrogenase Afford Selectivity over the Human Enzyme through Tight Binding Interactions. Acs Infect Dis. (2021)
- Release Date
- 2021-01-27
- Peptides
- Dihydrolipoyl dehydrogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.21 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x WPM: N~2~-methyl-N~2~-[(5-methyl-1H-indazol-7-yl)sulfonyl]-N-(1-methyl-2-oxo-1,2-dihydropyridin-4-yl)glycinamide(Non-covalent)
- 9 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ginn, J. et al., Whole Cell Active Inhibitors of Mycobacterial Lipoamide Dehydrogenase Afford Selectivity over the Human Enzyme through Tight Binding Interactions. Acs Infect Dis. (2021)
- Release Date
- 2021-01-27
- Peptides
- Dihydrolipoyl dehydrogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D