- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.21 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 10 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 9 residues within 4Å:- Chain A: Q.453, E.454, H.457, I.464, N.465
- Chain B: E.323, A.324, V.327
- Ligands: GOL.3
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:Q.453, A:E.454, A:N.465
- Water bridges: A:E.454, B:A.324
GOL.3: 7 residues within 4Å:- Chain A: R.440
- Chain B: A.324, V.328, L.339, L.341, R.430
- Ligands: GOL.2
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:L.339, A:R.440, A:R.440
GOL.4: 4 residues within 4Å:- Chain A: A.25, Q.26, K.107
- Ligands: GOL.10
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.107, A:K.107
- Water bridges: A:A.25
GOL.5: 6 residues within 4Å:- Chain A: K.52, A.183, E.187, L.318, A.350
- Ligands: FAD.1
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.52, A:K.52
- Water bridges: A:A.350
GOL.9: 8 residues within 4Å:- Chain A: E.323, A.324, V.327
- Chain B: Q.453, E.454, H.457, I.464, N.465
6 PLIP interactions:1 interactions with chain A, 5 interactions with chain B- Water bridges: A:A.324, B:H.443
- Hydrogen bonds: B:Q.453, B:Q.453, B:E.454, B:N.465
GOL.10: 5 residues within 4Å:- Chain A: K.105, N.106, K.107
- Chain B: H.462
- Ligands: GOL.4
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:K.107, A:K.107, B:H.462
- Water bridges: A:K.105, B:M.463
GOL.11: 3 residues within 4Å:- Chain B: F.101, K.104, K.105
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:F.101, B:K.104, B:K.104
GOL.12: 4 residues within 4Å:- Chain B: Q.429, R.430, D.432
- Ligands: GOL.13
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.429, B:R.430
GOL.13: 5 residues within 4Å:- Chain B: L.339, R.430, W.431, D.432
- Ligands: GOL.12
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:D.432
GOL.14: 7 residues within 4Å:- Chain B: K.37, Y.38, S.146, S.147, E.164, N.274
- Ligands: FAD.6
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:K.37, B:K.37
- Water bridges: B:Y.163, B:N.274
- 2 x WPM: N~2~-methyl-N~2~-[(5-methyl-1H-indazol-7-yl)sulfonyl]-N-(1-methyl-2-oxo-1,2-dihydropyridin-4-yl)glycinamide(Non-covalent)
WPM.7: 14 residues within 4Å:- Chain A: A.383, N.384, A.385, H.445, E.450, N.465, F.466
- Chain B: Y.18, L.44, R.95, G.98, V.99, F.101, E.323
8 PLIP interactions:6 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:A.383, A:F.466
- Hydrogen bonds: A:A.383, A:N.465, B:R.95
- Water bridges: A:A.385, A:A.385, B:R.95
WPM.8: 14 residues within 4Å:- Chain A: Y.18, L.44, R.95, G.98, V.99, F.101, E.323
- Chain B: A.383, N.384, A.385, H.445, E.450, N.465, F.466
8 PLIP interactions:7 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:A.383, B:F.466
- Hydrogen bonds: B:A.383, B:N.465, A:R.95
- Water bridges: B:N.384, B:H.445, B:H.445
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ginn, J. et al., Whole Cell Active Inhibitors of Mycobacterial Lipoamide Dehydrogenase Afford Selectivity over the Human Enzyme through Tight Binding Interactions. Acs Infect Dis. (2021)
- Release Date
- 2021-01-27
- Peptides
- Dihydrolipoyl dehydrogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
IB
J
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.21 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 10 x GOL: GLYCEROL(Non-functional Binders)
- 2 x WPM: N~2~-methyl-N~2~-[(5-methyl-1H-indazol-7-yl)sulfonyl]-N-(1-methyl-2-oxo-1,2-dihydropyridin-4-yl)glycinamide(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ginn, J. et al., Whole Cell Active Inhibitors of Mycobacterial Lipoamide Dehydrogenase Afford Selectivity over the Human Enzyme through Tight Binding Interactions. Acs Infect Dis. (2021)
- Release Date
- 2021-01-27
- Peptides
- Dihydrolipoyl dehydrogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
IB
J