- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.21 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x WPM: N~2~-methyl-N~2~-[(5-methyl-1H-indazol-7-yl)sulfonyl]-N-(1-methyl-2-oxo-1,2-dihydropyridin-4-yl)glycinamide(Non-covalent)
WPM.2: 14 residues within 4Å:- Chain A: Y.18, L.44, R.95, G.98, V.99, F.101, E.323
- Chain B: A.383, N.384, A.385, H.445, E.450, N.465, F.466
9 PLIP interactions:6 interactions with chain B, 3 interactions with chain A- Hydrophobic interactions: B:F.466
- Hydrogen bonds: B:A.383, B:N.465, A:R.95
- Water bridges: B:N.384, B:A.385, B:K.386, A:R.95, A:G.98
WPM.3: 14 residues within 4Å:- Chain A: A.383, N.384, A.385, H.445, E.450, N.465, F.466
- Chain B: Y.18, L.44, R.95, G.98, V.99, F.101, E.323
8 PLIP interactions:6 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:A.383, A:F.466
- Hydrogen bonds: A:A.383, A:N.465, B:R.95
- Water bridges: A:A.385, A:A.385, B:R.95
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 6 residues within 4Å:- Chain A: R.23, Q.26, E.331
- Chain B: H.457, G.461, H.462
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:H.457, B:H.462, A:R.23, A:E.331
GOL.5: 8 residues within 4Å:- Chain A: Q.453, E.454, H.457, I.464, N.465
- Chain B: E.323, V.327
- Ligands: GOL.10
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Q.453, A:E.454, A:N.465
- Water bridges: A:E.454, A:E.454
GOL.6: 8 residues within 4Å:- Chain A: R.440, H.457, V.460, H.462
- Chain B: R.23, Q.26, E.331
- Ligands: GOL.10
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:H.457, A:H.462, B:E.331
GOL.7: 4 residues within 4Å:- Chain A: D.67, A.70, F.71, G.391
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:D.67
- Water bridges: B:R.87
GOL.9: 7 residues within 4Å:- Chain A: E.323, V.327
- Chain B: Q.453, E.454, H.457, I.464, N.465
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:E.323, B:N.465
- Water bridges: A:A.324
GOL.10: 10 residues within 4Å:- Chain A: A.439, R.440, V.442, Q.453
- Chain B: A.324, V.327, V.328, L.339
- Ligands: GOL.5, GOL.6
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:R.440, A:R.440, A:Q.453, B:L.339
- Water bridges: B:A.324
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ginn, J. et al., Whole Cell Active Inhibitors of Mycobacterial Lipoamide Dehydrogenase Afford Selectivity over the Human Enzyme through Tight Binding Interactions. Acs Infect Dis. (2021)
- Release Date
- 2021-01-27
- Peptides
- Dihydrolipoyl dehydrogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
MB
N
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.21 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x WPM: N~2~-methyl-N~2~-[(5-methyl-1H-indazol-7-yl)sulfonyl]-N-(1-methyl-2-oxo-1,2-dihydropyridin-4-yl)glycinamide(Non-covalent)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ginn, J. et al., Whole Cell Active Inhibitors of Mycobacterial Lipoamide Dehydrogenase Afford Selectivity over the Human Enzyme through Tight Binding Interactions. Acs Infect Dis. (2021)
- Release Date
- 2021-01-27
- Peptides
- Dihydrolipoyl dehydrogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
MB
N