SMTL ID : 7ktr.1

Cryo-EM structure of the human SAGA coactivator complex (TRRAP, core)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x IHP: INOSITOL HEXAKISPHOSPHATE(Non-covalent)

IHP.1: 9 residues within 4Å: Chain A: K.2364, R.2367, K.2368, R.2398, Q.2399, K.2402, K.2472, K.2512, K.2894 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:R.2367, A:Q.2399 Salt bridges: A:K.2364, A:R.2367, A:K.2368, A:K.2368, A:K.2368, A:R.2398, A:R.2398, A:K.2402, A:K.2402, A:K.2402, A:K.2472, A:K.2512, A:K.2512, A:K.2512, A:K.2894, A:K.2894

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Herbst, D.A. et al., Structure of the human SAGA coactivator complex. Nat.Struct.Mol.Biol. (2021)

Release Date

2021-11-10

Peptides

Transformation/transcription domain-associated protein,Transformation/transcription domain-associated protein,Transformation/transcription domain-associated protein,Transformation/transcription domain-associated protein: A
TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L: B
Isoform 3 of Transcription factor SPT20 homolog: C
STAGA complex 65 subunit gamma,DhaA,STAGA complex 65 subunit gamma,STAGA complex 65 subunit gamma,DhaA,STAGA complex 65 subunit gamma,STAGA complex 65 subunit gamma,DhaA: D
Transcription initiation factor TFIID subunit 9B: E
TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L: F
Transcription initiation factor TFIID subunit 12: G
Transcription initiation factor TFIID subunit 10: H
Transcription initiation protein SPT3 homolog,Transcription initiation protein SPT3 homolog,Transcription initiation protein SPT3 homolog: I
Transcriptional adapter 1: J
Ataxin-7: K

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
N

Transformation/transcription domain-associated protein,Transformation/transcription domain-associated protein,Transformation/transcription domain-associated protein,Transformation/transcription domain-associated protein

TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L

Isoform 3 of Transcription factor SPT20 homolog

STAGA complex 65 subunit gamma,DhaA,STAGA complex 65 subunit gamma,STAGA complex 65 subunit gamma,DhaA,STAGA complex 65 subunit gamma,STAGA complex 65 subunit gamma,DhaA

Transcription initiation factor TFIID subunit 9B

TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L

Transcription initiation factor TFIID subunit 12

Transcription initiation factor TFIID subunit 10

Transcription initiation protein SPT3 homolog,Transcription initiation protein SPT3 homolog,Transcription initiation protein SPT3 homolog

Transcriptional adapter 1

Ataxin-7

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