SMTL ID : 7l1v.1

Orexin Receptor 2 (OX2R) in Complex with G Protein and Small-Molecule Agonist Compound 1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-mer

Ligands

1 x XGD: 4'-methoxy-N,N-dimethyl-3'-{[3-(2-{[2-(2H-1,2,3-triazol-2-yl)benzene-1-carbonyl]amino}ethyl)phenyl]sulfamoyl}[1,1'-biphenyl]-3-carboxamide(Non-covalent)

XGD.1: 22 residues within 4Å: Chain E: C.113, A.116, T.117, V.120, E.124, W.126, P.137, Q.140, T.141, V.144, Q.193, M.197, F.213, V.215, C.216, F.233, I.295, N.299, R.303, Y.318, H.325, Y.329 8 PLIP interactions: 8 interactions with chain E Hydrophobic interactions: E:T.117, E:P.137, E:F.233, E:I.295, E:N.299, E:Y.318 Hydrogen bonds: E:Q.140, E:Q.140

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hong, C. et al., Structures of active-state orexin receptor 2 rationalize peptide and small-molecule agonist recognition and receptor activation. Nat Commun (2021)

Release Date

2021-02-10

Peptides

Engineered Guanine nucleotide-binding protein subunit alpha: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: C
single-chain antibody Fv fragment (svFv16): D
Hypocretin receptor type 2: E
Synthetic nanobody 51 (Sb51): F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
H

E
R

F
S

Membrane

We predict this structure to be a membrane protein.
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Engineered Guanine nucleotide-binding protein subunit alpha

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

single-chain antibody Fv fragment (svFv16)

Hypocretin receptor type 2

Synthetic nanobody 51 (Sb51)

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