SMTL ID : 7td1.1

Lysophosphatidic acid receptor 1-Gi complex bound to LPA, state a

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x NKP: (2R)-2-hydroxy-3-(phosphonooxy)propyl (9E)-octadec-9-enoate(Non-covalent)

NKP.1: 27 residues within 4Å: Chain A: Y.44, K.49, L.115, T.119, G.120, T.123, W.131, R.134, Q.135, I.138, D.139, L.142, M.208, A.209, Y.212, Y.216, L.217, W.220, W.281, G.284, L.287, L.288, E.303, K.304, F.306, L.307, A.310 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.142, A:Y.216, A:L.217, A:W.220, A:L.287, A:L.307 Hydrogen bonds: A:Y.44, A:G.120, A:T.123, A:T.123, A:Q.135, A:K.304 Salt bridges: A:K.49, A:R.134, A:K.304

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, S. et al., Differential activation mechanisms of lipid GPCRs by lysophosphatidic acid and sphingosine 1-phosphate. Nat Commun (2022)

Release Date

2022-02-09

Peptides

Lysophosphatidic acid receptor 1: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: B
Guanine nucleotide-binding protein G(i) subunit alpha-1: C
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
R

B
B

C
A

D
G

Membrane

We predict this structure to be a membrane protein.
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Lysophosphatidic acid receptor 1

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(i) subunit alpha-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

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