SMTL ID : 7l2i.1

Cryo-EM structure of full-length TRPV1 at pH6a state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x XJA: (2S)-1-(butanoyloxy)-3-{[(R)-hydroxy{[(1S,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propan-2-yl tridecanoate(Non-covalent)

XJA.1: 11 residues within 4Å: Chain A: V.512, D.513, S.514, Y.515, S.516, L.519, T.554, Y.558, R.561, E.574, Q.704 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.519 Hydrogen bonds: A:Y.515, A:S.516, A:S.516, A:Q.704 Salt bridges: A:R.561 XJA.2: 13 residues within 4Å: Chain B: R.413, V.512, D.513, S.514, Y.515, S.516, L.519, T.554, Y.558, R.561, E.574, I.700, Q.704 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:L.519 Hydrogen bonds: B:R.413, B:Y.515, B:S.516, B:S.516, B:Q.704 Salt bridges: B:R.561 XJA.3: 11 residues within 4Å: Chain C: V.512, D.513, S.514, Y.515, S.516, L.519, T.554, Y.558, R.561, E.574, Q.704 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:L.519 Hydrogen bonds: C:Y.515, C:S.516, C:S.516, C:Q.704 Salt bridges: C:R.561 XJA.4: 11 residues within 4Å: Chain D: D.513, S.514, Y.515, S.516, L.519, T.554, Y.558, R.561, E.574, Q.704, I.707 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:L.519 Hydrogen bonds: D:Y.515, D:S.516, D:S.516, D:Q.704 Salt bridges: D:R.561

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, K. et al., Structural snapshots of TRPV1 reveal mechanism of polymodal functionality. Cell (2021)

Release Date

2021-09-22

Peptides

Transient receptor potential cation channel subfamily V member 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
D

D
B

Membrane

We predict this structure to be a membrane protein.
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Transient receptor potential cation channel subfamily V member 1

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