SMTL ID : 7l2j.1

Cryo-EM structure of full-length TRPV1 at pH6c state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x XJ7: (2S)-1-(butanoyloxy)-3-{[(R)-hydroxy{[(1r,2R,3S,4S,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propan-2-yl tridecanoate(Non-covalent)

XJ7.1: 16 residues within 4Å: Chain A: D.513, S.514, Y.515, S.516, E.517, L.519, F.547, T.554, N.555, L.557, R.561, E.574, K.575, L.578, I.700, Q.704 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.547, A:L.557, A:L.578 Hydrogen bonds: A:Y.515, A:S.516, A:K.575 Salt bridges: A:R.561 XJ7.2: 17 residues within 4Å: Chain B: R.413, D.513, S.514, Y.515, S.516, E.517, L.519, F.547, T.554, L.557, R.561, E.574, K.575, L.578, I.700, Q.704, I.707 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:F.547, B:L.557, B:L.578 Hydrogen bonds: B:R.413, B:R.413, B:Y.515, B:S.516, B:K.575 Salt bridges: B:R.561 XJ7.3: 16 residues within 4Å: Chain C: D.513, S.514, Y.515, S.516, E.517, L.519, F.547, T.554, L.557, R.561, E.574, K.575, L.578, I.700, Q.704, I.707 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:F.547, C:L.557, C:L.578 Hydrogen bonds: C:D.513, C:Y.515, C:S.516, C:S.516, C:K.575 Salt bridges: C:R.561 XJ7.4: 16 residues within 4Å: Chain D: D.513, S.514, Y.515, S.516, E.517, L.519, F.547, T.554, L.557, R.561, E.574, K.575, L.578, I.700, Q.704, I.707 8 PLIP interactions: 8 interactions with chain D Hydrophobic interactions: D:F.547, D:L.557, D:L.578 Hydrogen bonds: D:Y.515, D:S.516, D:K.575, D:Q.704 Salt bridges: D:R.561

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, K. et al., Structural snapshots of TRPV1 reveal mechanism of polymodal functionality. Cell (2021)

Release Date

2021-09-22

Peptides

Transient receptor potential cation channel subfamily V member 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Transient receptor potential cation channel subfamily V member 1

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