SMTL ID : 7l2o.1

Cryo-EM structure of RTX-bound full-length TRPV1 at pH 5.5

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x 6EU: resiniferatoxin(Non-covalent)

6EU.1: 17 residues within 4Å: Chain A: Y.515, S.516, L.519, F.547, A.550, M.551, T.554, N.555, L.557, Y.558, R.561, I.573, E.574, I.577 Chain C: F.595, I.672, L.673 9 PLIP interactions: 6 interactions with chain A, 3 interactions with chain C Hydrophobic interactions: A:Y.515, A:L.519, A:F.547, A:I.577, C:I.672, C:L.673, C:L.673 Hydrogen bonds: A:S.516, A:R.561 6EU.2: 18 residues within 4Å: Chain B: Y.515, S.516, L.519, F.547, A.550, M.551, T.554, N.555, L.557, Y.558, R.561, I.573, E.574, I.577, L.581 Chain D: F.595, I.672, L.673 11 PLIP interactions: 8 interactions with chain B, 3 interactions with chain D Hydrophobic interactions: B:Y.515, B:L.519, B:F.547, B:L.557, B:I.577, B:L.581, D:I.672, D:L.673, D:L.673 Hydrogen bonds: B:S.516, B:R.561 6EU.3: 18 residues within 4Å: Chain B: F.595, I.672, L.673 Chain C: Y.515, S.516, L.519, F.547, A.550, M.551, T.554, N.555, L.557, Y.558, R.561, I.573, E.574, I.577, L.581 10 PLIP interactions: 7 interactions with chain C, 3 interactions with chain B Hydrophobic interactions: C:Y.515, C:L.519, C:F.547, C:I.577, C:L.581, B:I.672, B:L.673, B:L.673 Hydrogen bonds: C:S.516, C:R.561 6EU.4: 17 residues within 4Å: Chain A: F.595, I.672, L.673 Chain D: Y.515, S.516, L.519, F.547, A.550, M.551, T.554, N.555, L.557, Y.558, R.561, I.573, E.574, I.577 10 PLIP interactions: 7 interactions with chain D, 3 interactions with chain A Hydrophobic interactions: D:Y.515, D:L.519, D:F.547, D:L.557, D:I.577, A:I.672, A:L.673, A:L.673 Hydrogen bonds: D:S.516, D:R.561

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, K. et al., Structural snapshots of TRPV1 reveal mechanism of polymodal functionality. Cell (2021)

Release Date

2021-09-22

Peptides

Transient receptor potential cation channel subfamily V member 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
D

D
B

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Transient receptor potential cation channel subfamily V member 1

Related Entries With Identical Sequence