SMTL ID : 7l73.1

Crystal structure of the first bromodomain (BD1) of human BRDT bound to ERK5-IN-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.46 Å

Oligo State

monomer

Ligands

2 x VYJ: 11-cyclopentyl-2-({2-ethoxy-4-[4-(4-methylpiperazin-1-yl)piperidine-1-carbonyl]phenyl}amino)-5-methyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one(Non-covalent)

VYJ.1: 10 residues within 4Å: Chain A: W.26, P.27, F.28, V.32, K.36, L.37, L.39, N.85, D.90, I.91 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.26, A:W.26, A:P.27, A:L.37, A:L.39, A:D.90, A:I.91 Hydrogen bonds: A:N.85 pi-Stacking: A:W.26 VYJ.2: 8 residues within 4Å: Chain A: I.71, N.75, F.102, M.103, L.106, S.107, Q.108, M.109 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.106 Hydrogen bonds: A:N.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Karim, R.M. et al., Differential BET Bromodomain Inhibition by Dihydropteridinone and Pyrimidodiazepinone Kinase Inhibitors. J.Med.Chem. (2021)

Release Date

2021-06-30

Peptides

Bromodomain testis-specific protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain testis-specific protein

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