SMTL ID : 7l9l.1

Crystal structure of the second bromodomain (BD2) of human BRD3 bound to BI2536

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x R78: 4-{[(7R)-8-cyclopentyl-7-ethyl-5-methyl-6-oxo-5,6,7,8-tetrahydropteridin-2-yl]amino}-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide(Non-covalent)

R78.1: 12 residues within 4Å: Chain A: W.29, P.30, F.31, V.35, L.40, L.42, Y.45, C.84, Y.87, N.88, H.92, V.94 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.35, A:L.40, A:L.42, A:Y.45, A:Y.87, A:V.94 Hydrogen bonds: A:N.88 Water bridges: A:P.30

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: Y.11, S.14, E.18, R.108 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.14, A:S.14 Water bridges: A:Y.11, A:Y.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Karim, R.M. et al., Differential BET Bromodomain Inhibition by Dihydropteridinone and Pyrimidodiazepinone Kinase Inhibitors. J.Med.Chem. (2021)

Release Date

2021-07-07

Peptides

Bromodomain-containing protein 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 3

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